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JGI Accepts 17 Proposals for Community Science Program
… of California, Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost … University of Victoria in Canada is interested in predatory algae known as Rhodelphis. Ederson Jesus of Embrapa, …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Plant genotype and rhizobia strain combinations strongly influence the transcriptome under heavy metal stress conditions in Medicago truncatula
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JGI@25: Building a Better Bean
… was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those … 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering time, … dicot,” Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… computing and had an amazing opportunity to collaborate and network with talented scientists and staff at the JGI.” … Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery Kayla Kelly … Brian Bushnell Project:  Machine Learning Applications in Gene Annotation Masato Terasaki Mentor: Yumary Vasquez …
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A Model System for Perennial Grasses
… grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … were subjected to a monthlong drought, and then half the plants were watered just before harvesting. As HAL2 has … used QTL mapping to find the genomic regions that control gene expression and physiological responses to drought. They …
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Kjiersten Fagnan
… UC CORO participant, 2021 Member of the Networking and Information Technology Research and … Opioid Epidemic: Determining the Epistatic and Pleiotropic Genetic Architectures for Chronic Pain and Opioid … International Conference for High Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants … it to any genome of interest.” This figure outlines the general methodology he and Rokhsar came up with: Until they …
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Forest Fungi, Seagrass, and a New View of Symbiosis
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