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Olpidium, The Key to the Origin of Terrestrial Fungi
… endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t cause much damage to the hosts, … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong … revealed that the branches among Olpidium and the first few splits in the non-flagellated terrestrial fungi …
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Soil virus offers insight into maintaining microorganisms
… (PNNL), with additional support from the SLAC National Accelerator Laboratory. After PNNL researchers identified a … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … research into understanding why these AMGs exist in the first place, and what function other AMGs may serve.  The …
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Open Frameworks Training the Next Generation of Scientists
… student research and skill development while curating reusable microbiome data. Undergraduate educators are … and genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many … (Module 5) – that enables student-curated  FAIR (findable, accessible, interoperable, and reusable) data, readily …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… a small city’s population, the number of viruses in the same drop—the vast majority not harmful to humans could be … roles in carbon and other nutrient cycles. “This is the first study to take a more global look at giant viruses by … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they … the sequences of these three chromosomes. These sequences account for approximately 12% of the total human genome, …
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Microbial Genomics & Metagenomics (MGM) Workshop
… workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data …
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Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales)
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Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme
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Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug
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Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee
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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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