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Defining a Pan-Genome for Antarctic Archaea
… are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project … of the US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term …
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Evolution of a Fungal Gene Expression Regulator
… than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for … work included investigating sphagnum moss and the role the plant’s sex plays in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have generated plenty of … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include … He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … Selected for the 2012 LBNL “Emerging Leader Program” at the UC Berkeley Haas …
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JGI Welcomes New UEC Members
… and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, …
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… the future of microbiome science. Organizers The EcoFAB 2025 Conference is organized by the EcoFAB Steering Committee, …
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Data Policy
… this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), … and outside repositories (e.g. NCBI SRA or GenBank; GNPS2) as described in the  product offerings and are … public deposition of the data at outside repositories),  (2) PI request to list data publicly, (3) at the end of the …
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The JGI Data Portal: Improving User Experience
… Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … all the data associated with the latest version of the plant portal, weren’t able to complete this task. Improving …
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A Grass Model to Help Improve Giant Miscanthus
… miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … Berkeley and the HudsonAlpha Center for Biotechnology. Most plants are diploids with two copies of each chromosome, one inherited from each parent. Some plants, known as polyploids, have more than two copies of …
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