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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of … flow — quantitative rates of element flow — to individual species?” As Hungate shared his approach to those questions … that completely depends on the context and oftentimes a single molecule can be what I like to call …
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JGI@25: Studying Sorghum’s Survival Skills
… lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for other plants, like the … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … to compare and reconcile the findings, coming up with a single, non-redundant dataset,” said Koonin. “Hopefully, …
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Igor Grigoriev
… protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes … of researchers in genome projects and organized numerous genomics workshops. … Russia Postdoctoral training in computational structural genomics, University of California, Berkeley, CA …
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An Integrated Dataset to Understand Ecosystem Interaction
… managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were … ( https://ror.org/05cwx3318 ) is supported by the Genomic Science Program in the U.S. Department of Energy, …
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Exploring Polymorphisms Created by Transposable Elements
… elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… a Genome Insider podcast minisode. To date it is the single largest effort to provide a cataloged and curated … were able to provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to … different gene deletions in four gammaproteobacterial species, and then removing the editing machinery afterward … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… organisms who all consume different compounds. Microbial species will vary in activity as well; at any given time, many species in a community may be in ‘low power mode’, where … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … et. al., Genome‐wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress …
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JGI-UC Merced Interns Share Their 2021 Experiences
… the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … Cross Species Integration of Single Cell Transcriptomes … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis Roots …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… in, on and around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 … JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group . Woyke also holds appointments as …
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