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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, …
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JGI Announces 2025 New Investigator Portfolio
… You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, … They will harness JGI capabilities such as metatranscriptomics and environmental DNA sequencing to explore microbial …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI Announces 2026 Functional Genomics Recipients
… year, the Joint Genome Institute (JGI) accepts proposals for state-of-the-art functional genomics research from scientists who translate genomic …
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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Comparative transcriptomics provides insights into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus
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Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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