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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help … analyses) to break up the compounds and to puzzle out their structures. Their results indicate that anaerobic fungi …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, … viruses has enabled findings on host range, morphological structures, and infection strategies. More recently, …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written … the research field’s move toward characterizing the human microbiome  by its genomes and metagenome , rather than just …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER Funding Opportunity … The JGI is inviting researchers using the U.S. Culture Collection Network … The JGI performs sequencing, metabolomics and synthesis on behalf of the U.S. …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … could become more sustainable through applications of microbiome science; our water quality, our water resource needs are, are tightly coupled to microbiome science. I mean, I’m really, it’s not hyperbole, …
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster of members. … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI … who offer perspectives on what the next five years of innovation could look like. In one article, Micro-Scale … Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To … database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as sequences from the …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out … ability to adapt to a changing scientific and technological landscape.” Scientific Impact Takes Time Dan Drell , Former …
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