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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Dealing with Drought: Uncovering Sorghum’s Secrets
… to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … For the study, the team grew two sorghum varieties: one that tolerates better pre-flowering drought stress and a …
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … applications instead of on simulation codes. “JGI is one of the largest producers of environmental genomics data …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … only for viruses and other microbes , but for scientists. One emerging industry application of DGRs is to use them to …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) … a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … as well as the Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are …
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UC Merced Interns Reflect on Their JGI Summer Projects
Energy. Students also worked with their mentors to practice and develop presentation skills as well as build their … language processing techniques to categorize genetic information. Learn more about their work here in a series of … Check out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of developing alternative fuels from …
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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … Papers, defined in the Methodology section as “those that rank in the top 1% by citations for papers published and … Highly Cited science and social science researchers in one or more of 21 fields appear on the 2019 list. …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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