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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant lineages … to P.-M.D. and H.P. (80|PRIME MicMac), from the Deutsche Forschungsgemeinschaft (ZA, 259/9) to S.Z., from the …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… called phytoplankton play an outsize role in cycling carbon and nutrients. These microscopic algae have managed … other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than non-polar algae. They …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus … nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential in Sacramento-San Joaquin Delta, … “Effect of drought on soil microbial metabolisms driving carbon allocation and volatile organic compound cycling in …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … expertise to support the global research community in studies of complex biological and environmental systems. We …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental … the JGI’s ability to predict and respond to biogeochemical cycles, which builds on the DOE’s interest in mitigating …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their … method could also improve genome recovery in microbiome studies, these scientists (now at Stanford University) …
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Promoting the Power of Viral Metagenomics
… Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to … the planet’s oceans can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the best ways to study such viruses … address some of the most pressing challenges of our time. For more information, please visit  …
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Streamlining Regulon Identification in Bacteria
… genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential … regulation is critical to ensuring genes vital for growth and survival across various environments are … can be applied to any transcription factors or regulatory proteins that control transcription. Summary Transcription …
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Virus-Microbe Interactions of Mud Island Mangroves
… of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. His work centers on … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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