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Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living …

With a new methodology, scientists are now getting more complete genomic results from single cells. The … years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The traditional … stitch the pieces together and attempt to put them back into the original genomes. These metagenome-assembled …

Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …

… of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and … to past climate change will provide unprecedented insight into the mechanisms that perennial grasses have and will use …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without previously known …

For many scientists, the culmination of their work into a written report that is … Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution . Mol Biol …

Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt …

… are utilizing deep learning to automatically generate insights from metagenomic data. In deep learning, a branch … learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of … costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two …

… gases from Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …

In a special issue of mSystems , out May 14, 2019, JGI … fluorescence-activated cell sorting (FACS) to sort cells into several small pools before sequencing to recover rare … in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating …

… both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant …