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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … AB in Physics, Princeton University, NJ MS in Theoretical Physics, … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, UC Berkeley 2012 Cotton Biotechnology Award, …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community … Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, … State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these … and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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JGI-USCCN Strain Sequencing Opportunity
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their … are working with scientists from around the world – and the JGI – to understand them better. …
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