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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… proteins, as well as recycling nitrogen. Now, with insight into a specific enzyme class that’s important to the way … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … where it is a major part of the flora, fire moss has adapted to conditions such as UV irradiation, heavy metal … genomes’ metabolic pathways could lead to the discovery of genes that could be used for multiple biotechnological …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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Viruses Reprogram Cells into Different Virocells
… about virus-infected microbial cells that are transformed into virocells, and how the outcomes of these infections can … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and … models. Next, the researchers are working towards better understanding how nutrient availability, or lack thereof, …
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JGI Announces 2023 Community Science Program Awardees
… This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, understanding natural communities important for carbon …
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A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … increasing their yields and improving their abilities to adapt to extreme environments such as poor soils and drought. … of the M. sinensis and M. sacchariflorus accessions and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant …
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Toward More Efficient Artificial Photosynthesis
… including sunlight, carbon and water, to convert them into energy that is then stored. A team led by researchers … carbon captured from the atmosphere in a process that generates energy. The MPI team ultimately aims to develop an … and other parts that can be further explored for novel functions. In the current study, the team combined the CETCH …
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2025 NeLLi Symposium
… Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … the Desert Research Institute. Metagenomic and single-cell sequence data have provided a means to access novel …
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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … bioinformatics pipelines to transition bench-scale methods into production workflows. He developed and scaled the multiDAP-seq assay, a method that enables high-throughput …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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