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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Igor Grigoriev
… to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  … Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al (2021) Anaerobic gut fungi are an untapped reservoir of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team … the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked about a …
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How to Target a Microbial Needle within a Community Haystack
… allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … Testing the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a … for less than one percent of the sequences from a bulk metagenome, to just over 50 percent of the targeted …
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Honey Bee Gut Microbiota Divvy Up Dinner
… that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi
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