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Training the Next Generation of Talent
… Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole … how bacteria can be driven toward compounds produced by the plant roots. He is now working in Fabian Filipp’s lab, which …
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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Data Policy
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The JGI Data Portal: Improving User Experience
… Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … all the data associated with the latest version of the plant portal, weren’t able to complete this task. Improving …
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A Grass Model to Help Improve Giant Miscanthus
… miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … Berkeley and the HudsonAlpha Center for Biotechnology. Most plants are diploids with two copies of each chromosome, one inherited from each parent. Some plants, known as polyploids, have more than two copies of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the physical …
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FICUS Overview
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… which affects a number of environments, including plants, soil, and the gut. To better understand the dynamics … and symbiotic bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists … difficult to use inside deep tissues. Additionally, all plants, many bacterial cultures, and environmental samples …
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Scaling Up Existing Skill Sets
… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer … UC Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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JGI-TMF Critical Minerals and Materials Call
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of …
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