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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric … point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … et. al. 2017 Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant Journal …
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A Community Resource for Secondary Metabolite Researchers
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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Fungal Friends or Foes in Plant Roots
… determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… to spring. These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The … diverse metabolic capabilities offer insights into how microbial processes might be harnessed for applications …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… functions. It plays an important role in regulating microbial cellulose production and biofilm formation, which … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls microbial colonization, which can affect pathogenic and …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three … W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences …
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