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Fungal & Algal Program
… The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international research team in collaboration with … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… and shipping; JGI will handle all subsequent processing from that point. JGI provides users with various outputs … publicly available. If you're requesting DNA synthesis from JGI, there's also a material transfer agreement that’s … project with Molecular Foundry once you have what is needed from JGI.   …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … in sustainable agriculture and clean energy. These evolutionary strategies that helped plants thrive under … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is … DNA modifications (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at the University …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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Plant Program
… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Tracing the Evolution of Shiitake Mushrooms
… Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … describe a strategy to recover high value products from human waste. They   genetically modified yeast to … around the world are exploring ways of separating urine from other waste streams and recovering resources that could …
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Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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First Monoploid Reference Sequence of Sugarcane
… species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an …
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