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CalTeach
… majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on STEM pedagogy, educational theory and promoting diversity, equity, and inclusion, with concurrent … local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math Education, as well as a …
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Scientific Advisory Committee
JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … on the effective management and strategic objectives of the JGI. The SAC serves as the Institute's key external … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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Learning to Look
… a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … related 16S rRNA genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, …
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Natural Prodcast Episode 3: The Primer, Part 3
… able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less … to be here and be able to discuss this incredible, natural diversity that we have at our fingertips. So I’m very …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Natural Prodcast Episode 14: Nigel Mouncey
I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … A few examples of those are obviously expanding the diversity of known secondary metabolites and their …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications The planet’s microbial diversity is immense, yet much of it remains unknown. For … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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