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Secondary Metabolites Program
… computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite … and the public, and provide programmatic access to all sequence and annotation data and their comments. … JGI …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple …
Learn more
A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … environmental samples around the world, resulting in a five-fold increase of RNA virus diversity. “The world of … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Picking Up Threads of Cotton Genomics
American Pima ( G. barbadense .) These are two of the five major lineages of cotton;  G. tomentosum ,  G. … Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is …
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Project Management Office
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JGIota: Looking Back at Sequencing for Soybeans
So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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JGI Portals
… of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …
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DNA Synthesis Program
Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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JGIota: The Algae Nicknamed ‘Chlamy’
UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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Jane Grimwood Named HudsonAlpha Genomics Chair
A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples … paper on the release of the high quality reference genome sequence of green millet ( Setaria viridis ). The team of … A 2020 Nature Genetics paper describing the genomes of the five major cotton lineages. Grimwood was also part of the …
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