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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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Scientific Advisory Committee
… and Environmental Research (BER) program, set the final sequence allocation for this program. …
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CSP New Investigator Call
… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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Partners
… with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE …
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Metagenome Program
… comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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Jeremy Schmutz
For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … Nature 2010;463:763-8. Schmutz, J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: …
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Natural Prodcast Episode 15: Katherine Duncan
Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Mission
… in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission … basis of their behavior in the environment.  The JGI genome sequences and metabolomes of microbes and microbial …
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