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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The … of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present …
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise of, I guess, …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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Plant Pan-Genomics Comes of Age
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