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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of …
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Improving the Cacao Genome and Phytozome
… brands couldn’t exist without cocoa.  But today the plant is under threat due to climate change and devastating … with others to develop healthier and more productive cacao plants and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … maybe obvious or notable. We are still in – not an early stage. I think we can identify most secondary metabolism …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as … 3 P. pachyrhizi genomes on MycoCosm …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley … Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- Agriculture” 2021-  Weill …
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JGI Advisory Committee
… Advisory Committee, the Informatics Advisory Committee, the Plant Program User Advisory Committee, the Prokaryote …
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Special Initiatives & Programs
… located in geographically distinct areas and use different plants both for laboratory research and for improving … center focuses on creating robust high-yielding feedstock plants, using advanced genetic technology to accelerate the … East Lansing, Michigan. This center is studying a range of plants and, in addition to exploring plant fiber breakdown, …
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Genomic features of bacterial adaptation to plants
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now disseminated around the … are senior authors of the  recent study published in  The Plant Journal.  this study included the discovery of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …
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