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Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the … with the intent of eventually transitioning to work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems …

… in their environment and eating them. They’re filter feeders that have a really important role on the reef and … end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  … ended up doing was pursuing with Jacques Ravel, at TIGR, metagenome sequencing, which was very early days for that …

… the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what … and so on. So I have the feeling that we are just at the stage in which synthetic biology could be making secondary … got the podcast. If you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N …

The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … been downloaded thousands of times, receiving excellent feedback from the general research community. It can be  …

… with plants (mycorrhizae), and particularly how fungi that feed on decaying plant matter (saprotrophs) have … allow host plants, such as candidate  bioenergy feedstock crops, to acquire nutrients. Additionally, these …

… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. …

… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … the strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, …

… [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they … a breadth of institutions, research topics and career stages. The election period concluded on December 23, 2021. …

… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …