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Data Policy
… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … in which data is publicly visible and available in JGI systems. Users not involved with the proposal under which … In past data policies, data were publicly visible in JGI systems only but use-restricted until publication by PIs or …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … we're primarily doing this by mass spec seeing different levels go up and down. We're pretty early on in that … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… when the snowpack melted went into the lake. And so the levels were decreasing at an alarming rate, but it has risen … hypersaline lakes– and start comparing and contrasting systems and then also comparing to the marine environment, … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …
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Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and noted that the approach he developed … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Soil virus offers insight into maintaining microorganisms
… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … X-rays.  This study only begins to unearth the insights to be found within soil viruses and AMGs. It could …
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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Natural Prodcast Episode 1: The Primer, Part 1
… the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so … this secondary metabolism, you take it to a different level. It just makes me think about how funny, you know, the …
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Natural Prodcast Episode 4: Nancy Keller
… ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … produced by Fusarium species that was produced to very high levels in South Africa, including Lesotho where I done my … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact …
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Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient
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Microbiome–metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient
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Natural Prodcast Episode 20: Brian Bachmann
… and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme … systems. But it allows us to assay on a single cell level against cell lines and against primary cells isolated …
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