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Secondary Metabolites Program
… metabolite compounds. To support users, our efforts include developing computational tools for predicting biosynthetic … (BGCs), advancing pathway analysis, optimization of cell- and cell free-based expression platforms, tools and … laboratory conditions by their native hosts. We are developing cell-free based systems to express BGCs that …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … wizard Saruman repeatedly tried to break through, finally resorting to explosives to succeed. Altiarchaea, like the … that corresponded to eight separate groups of viruses. To visualize one particular viral genome in action, they …
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Community Science Program
… the JGI also participates in publication of results. See more details on our Review Process below .  … What …
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JGI Portals
… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in … relationships as well as insights into clade-specific novelties and expansions.  … The SMC provides complete …
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A Powerful Technique to Study Microbes, Now Easier
… to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots have made …
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Data Ecosystem
… beyond genome annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data … data infrastructure and linked data technologies. The NMDC seeks to connect and engage the microbiome community to …
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A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells
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Uncovering Novel Genomes from Earth’s Microbiomes
… these researchers to be co-authors as part of IMG data consortium,” she said. Listen to study co-author Dan Udwary … respond to climate change. “With this dataset I can see where every microbe is found, and how abundant it is. … in expanding the diversity of the reference database he’s developing called the  Microbial Genomes Atlas to allow for …
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Rex Malmstrom
… pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … including those that require fluorescence activated cell sorting and non-standard molecular protocols.  Finally, his …
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Fungal & Algal Program
… carbon and produce valuable metabolites. The program seeks to expand our understanding of algal biology using … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … tools to enhance functional studies. These efforts seek to improve understanding of how fungi and algae …
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Sequencing Technologies
… and development approaches, testing various platforms to see what works best for applications. The team works hand in …
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