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… new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the …

… enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and … JGI’s impact. Data generated from a single investment will be reused for further science.  Notices Data Portal files … be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. Effective July 27, 2026, the …

… essential for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … of microbial hosts. Summary Photorhabdus luminescens proves fatal to insects. It is carried by an infectious …

… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, …

… algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  …

… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? … and biogeochemistry. This is a great opportunity to mention that we have a sister portal PhycoCosm ( …

… is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across … fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques … lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist …

… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology … How To Create an Annotated GenBank File There are several … open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop …

… Below are a list of webinars that can help you through the submission process by … here . You can find additional webinars covering how to use our data portals here.  …

… sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS … Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple …

… more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets … respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk Eric Wu and mentor Atif Shahab Edward Lu and … uh, Bob [Bowers], was super helpful and I, I just have so much more confidence and I can say that I’m an app developer …

… of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … devoid of oxygen and until recently were thought to be the only microorganisms capable of methanogenesis —  it’s … but they were discovered by genome sequencing, which is a much less biased approach to studying nature. That’s the …