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Natural Prodcast Episode 18: A CSP Primer
It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow … cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry …
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Frequently Asked Questions: Project Management
… can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … address, click the “Request email change” link. This will generate an email that will go to an administrator to … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Natural Prodcast Episode 15: Katherine Duncan
I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet … this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a single …
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The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum
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Improving genome assemblies by sequencing PCR products with PacBio
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JGI Portals
Our data platforms are a key resource for the broader scientific … all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum
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IMG Group
… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing … in a comprehensive comparative context. The IMG data warehouse integrates genome and metagenome datasets provided …
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