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Cataloging the Microbes that Manage the Health of River Systems
… microbial resource that provides information at multiple scales from genes to the community level. The Impact Rivers … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project. The award recognized the release of MetaHipMer, an end-to-end genome assembler that supports “an … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  …
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Game On: High School Students Drive Everglades Metagenomics Study
… The course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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JGI Portals
… a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. Check our … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … comprehensive access to information regarding genome and metagenome sequencing projects, and their associated …
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The Impact Understanding how individual microbes interact with each other in a community, and characterizing their …
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Natural Prodcast Episode 17: Cassandra Quave
… week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … a question about the complexity of the problem so and the scale. So thinking about 33,000 plants, how many plants …
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Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale
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Soil pH influences the structure of virus communities at local and global scales
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Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
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Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI
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