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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Draft Genome Sequences of Switchgrass Diazotrophs
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms …
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Partners
… (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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Products
… Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact … library types and quality of finished product depend on genome. Selected genomes will be improved based on …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  DAN:  …
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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A Genome-Wide Survey of Switchgrass Genome Structure and Organization
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. … for 3 years with the possibility for extension. Fungal genomes, for instance, can take up to a year or more to …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … with Ben and his group to work on sequencing, synthesis and genome mining technology to help access complicated natural … past two decades is that today, one thing is the ability of genome sequencing. So, in the past the natural products have …
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