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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This … program, which stands for International Cooperative Biodiversity Groups, and it’s this great program funded by the … right. ROGER:  That are found that way. And so relatively simple changes like that, I think, will make a really big …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … After your proposal is approved, the Contracts Officer will send required …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … The Microbial Program focuses on using advanced sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … The relatively small size of its genome also simplifies metabolic modeling and pathway optimization for enhanced … structures work in green algae. The genome is remarkably simple with only 7,500 genes, compared to 17,000 in the …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to provide guidance on … the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … the fungal tree of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … that allow them to efficiently break down the wide array of simple and complex components present in plant biomass. This … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … which form it emerged and how it gave rise to the different pathways we see today is not only important to understand … said. “Overall, these results show a striking case of how metabolic diversity can emerge from tinkering of a common …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address … The Plant Program advances our understanding of plants’ biological … for key plant species, enhancing our understanding of plant diversity and integrating various data types to explore the …
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