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… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … subset of transcripts up-regulated during toxin-inducing conditions. So that was pretty cool. And it was fun having, … going to happen. Dan: Tell us a little bit more about that prediction because… So we were just talking to Nancy Keller …

… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics … provides customized analysis, the JGI also participates in publication of results. …

… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … 300+ students 800+ iNaturalist observations All MycoEd protocols, course materials and bioinformatics exercises are … Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics exercises …

… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … is actually-- might be better, especially in really low-yielding products. We're interested in some of the hormones … for NRPSs nearby, and then we used both AntiSMASH and PRISM predictions to get an idea of what that NRPS peptide might …

… host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled experimental and computational approach, we … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … to understand how plant cells respond to low nutrient conditions (low nitrogen or low phosphorus), and how cell …

… The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an author on the paper … User Facility, as well as a member of  its Secondary Metabolites research group . That group, led by JGI Director …

… So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — but not …

… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … have developed and continue to improve automated assembly pipelines bringing in new technologies, in particular … interested in:  characterizing novel enzymatic activities using phylogenomic driven approaches, and understanding the …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on … to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For …