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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … annotation due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, … evolutionary processes. The team then extended their analysis beyond the reference set, using two additional …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … in the continental United States. They also provided multiple access points to the information. The team … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … because of its capacity to harness the strengths of multiple binning algorithms. They added that DAS Tool’s …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… Starting a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. … In the last year, JGI’s user community has helped propel multiple efforts along these lines, all with the goals of … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our conversation …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and …
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Metagenomic analysis of the ET‐743 producer
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … the metabolome into well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s … of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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