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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
Learn more
JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … (BER) missions. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question that …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … The DNA Synthesis Program plays a central role in advancing functional genomics, focusing on developing genetic … project. These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale AI-ready data and … expertise to support the global research community in studies of complex biological and environmental systems. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to …
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Emiley Eloe-Fadrosh
… 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Metagenomic analysis of a stable trichloroethene-degrading microbial community
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … artificially replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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