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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … co-lead author of the study with Kara Martin. “But these ecosystems are literally melting away.” Driven by climate …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate … to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, … Please review our FAQ in advance of contacting the PMO office.  …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … and over that when we move into new chemical ecologies, new ecosystems, we find new chemistry. It worked in the marine …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … the analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . …
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Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome‐resolved metagenomics
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … there has been no real analysis of protein families from metagenomes per se.”  Recently, other research teams have … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Q1  (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … BA in Biology, Aristotle University of Thessaloniki, Greece PhD …
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Host-specific and tissue-dependent orchestration of microbiome community structure in traditional rice paddy ecosystems
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … invisible to the sampling experiments probing Earth’s ecosystems. Viruses rarely grow well in environmental … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. …
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DNA repair enzymes of the Antarctic Dry Valley metagenome
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