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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 … the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has the … U.S. Department of Energy Joint Genome Institute (https:// …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … place, but you will not know they existed, up until you isolate the compound. But today, by genome sequencing, you … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … research proposals  here that integrate genomics with nanoscale science, accelerating discoveries and developing … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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User Support Analysis Group
… epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … marker genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted at any … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … hard it was – it felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to … reactions are timed are really going to tell us how to control some aspects of chemistry with the enzymes and so …
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Natural Prodcast Episode 17: Cassandra Quave
… that would be what it would be is to really help build a larger network of scientists across these countries. So … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … a question about the complexity of the problem so and the scale. So thinking about 33,000 plants, how many plants …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … to cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA … metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To meet these …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … was an opportunity to adapt my existing skill set to a new scale, which presented a host of interesting and ultimately … STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a high …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) …
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