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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … of background. My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – … slash natural product. And, can you just use that interchangeably? DAN: Sure. I mean, maybe — First, we can say, if …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA … Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the …
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Natural Prodcast
… species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on … line of communication to the scientific community. Host Dan Udwary talks to luminaries in the field about …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil microbiome diversity and function.  Nature … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … Inventory of Composable …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans are used to produce … crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , …
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Frederik Schulz
… enable novel insights into the diversity and important ecological roles of microeukaryotes in terrestrial … 39, 499-509. Schulz et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature. 578 … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … relationships, and how the mutualistic associations allow host plants, such as candidate  bioenergy feedstock crops, … team conducted a large-scale comparison, charting several changes caused by the lifestyle change. For example, the …
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Microbial Ecology in a Changing Climate
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … knew you had a molecule. And you knew that if you made this change, which might be a small change, might be a big … at naturalprodcast.com Special thanks, as always, to my co-host, Alison Takemura. <woohoo> If you like Alison, and want …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … and is interested in understanding the genomic basis and ecological consequences of microbe-microbe interactions. … sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy of …
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