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Plant Pan-Genomics Comes of Age
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a … P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the species range. …
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Silver age of GOLD introduces new features
… of the significant challenges in maximizing genomic data usage is having the appropriate contextual information, or … data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing genome annotations and … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) Symposium … Viral EcoGenomics & Applications (VEGA)  … The JGI is represented at conferences year round; find out where our researchers … about upcoming user-focused webinars and workshops we're hosting. …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … tree species and sites, reflecting ecological patterns shaped by both local conditions and the movement of microbes … community composition varied across both sites and host tree species, with geographic site exerting the …
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Natural Prodcast Episode 19: Bill Fenical
… will be monumental as the last episode with Alison as my co-host. We recorded this an awfully long time ago, and she’s … we want to talk a little bit about. It’s sort of early stages. But I think that is emblematic of some of the research … while and I think you’re definitely one of the people that shaped the field early on. So here we go. So maybe we start …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … have direct applications in bioenergy production, carbon management, and environmental sustainability. Fungi, with …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… r ecombinase- a ssisted  g enome  e ngineering ( CRAGE ). CRAGE enables scientists to insert large pieces of … into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel … and Environmental Microbiology , the researchers engineered root bacteria  Pseudomonas  and Ralstonia with enzymes that …
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome
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