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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring
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Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … that, but on– DAN UDWARY: On a big scale. ALISON NARAYAN: –massive scale, and then we’ll have that information for …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so everybody, readers of the library, can come to our databases and look for the specific information they are … and hundred thousand fungal strains, that will generate a massive amount of data that current technology has never …
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Frequently Asked Questions: Project Management
… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a … The majority of JGI projects come from the user community. Find out about …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. …
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Trent Northen
… roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching … train students and professors in laboratory techniques and data analyses compile original data for improving fungal … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work … and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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