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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer
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Bioavailable iron titrations reveal oceanic Synechococcus ecotypes optimized for different iron availabilities
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects … and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … While applications will be accepted that address any aspect of these mission areas, priority will be given to projects …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint … Episode Transcript … This is the first episode of Natural Prodcast, a podcast produced by the US Department of Energy Joint Genome Institute. In each episode, we’ll be discussing the …
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Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with … synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range …
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Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation
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