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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … in particular: a cytokinin response regulator that was expanded in a palindrome and shown to be undergoing gene … This work was supported by the NSF Dimensions of Biodiversity Program … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work … pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef … Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked to replace yeast’s native …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical review by JGI staff as well …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … three times the size of the human genome. There are four more fern genomes in progress. One unique aspect of …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. … help of JGI’s DNA synthesis grant. And that having a whole panel of these enzymes allows us to ask the questions which … Sure. ALISON NARAYAN: And so we usually start on small scale in the lab. So we’ll run things in like little …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you … of the cell. You can see cartoons where you’ll have the chromosomes pulling apart during cell division. And that’s … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … . One of the goals in updating the genome annotation was developing a high quality node for cacao used …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao … selected for our 2026 Community Science Program Large Scale call. This portfolio accelerates bioenergy innovation … CSP awardees as they embark on ambitious projects that span disciplines and scales,” said Tanja Woyke , the JGI’s …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … and letters of support you can communicate the scale of community interest in the data that you would like …
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