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Prokaryote Program User Advisory Committee
… and quality. The Committee does not perform management functions nor does it direct the Programs’ management teams …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … analytical standards to accurately measure environmental microbiome activity levels.This functional assay lets us …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … in Nature and Medicine.” It’s obviously focused more on the bacterial side of the field, and it’s a little hard to find … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary …
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … address, click the “Request email change” link. This will generate an email that will go to an administrator to … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Bacterial barcoding facilitates plant microbiome studies.
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … So the first thing we aimed for was to understand the functions of genes across the investigated plants. We did so …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Genome-wide identification of bacterial plant colonization genes
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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