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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding … of even one fungus in a taxon, then you can sequence related fungi and have crappy – Well, you know, you can have …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … With roughly half of all fungal genes still lacking functional annotations, the challenge to applying AI is …
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Strain Engineering
… The focus of this group, in recent years, has been to bring … to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Publication: Tyler BM et al. Phytophthora genome sequences …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … they found that microbial community composition and functional potential varied across tree species and sites, … with her JGI mentor, Robert Bowers . She contributed to the analysis of mobile genetic elements across all of the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led researchers to identify a gene related to seed dispersal in wild populations for the first …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … to propose multi-genome projects, opening new avenues for comparative regulatory studies across diverse species. … of years of evolution, suggesting it plays an important functional role in regulating gene expression. Focusing on …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code … they seem inconsequential. During this event or any of its related events, no participant should engage in harassment …
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Denoising inferred functional association networks obtained by gene fusion analysis
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together … industry, and government organizations for three days of scientific presentation, interactive panel discussions, …
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