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Natural Prodcast Episode 6: Marc Chevrette
… to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … stories from there as we go forward. And Marc’s quickly built up a great body of work, with interesting perspectives … the United States in … I forget the number, but it’s over 42, 43 states, but we’re also in many countries, including …
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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Natural Prodcast Episode 16: Marcy Balunas
… in firmly in the chemistry bucket. [LAUGHS] I don’t know that that’s ever necessarily like a good description of anyone because chemistry … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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JGI Portals
Our data platforms are a key resource for the broader scientific … for comparative analysis and annotation of all publicly available genomes from three domains of life, in a uniquely … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and …
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FICUS-NERSC/KBASE
Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most … bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … aim of producing at least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. … need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & Evolution , …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … Trends Microbiol. 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  Metagenomics uncovers gaps in … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing …
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Gene Expression: From On-Off Switch to Dial
… library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed … Force Office of Scientific Research under Award No. FA9550-14-1-0089, the Camille and Henry Dreyfus Foundation, and the …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler at   Humboldt … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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