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… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… Uncovering associations between plant roots and fungi that can help … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and …

… Cas14 proteins discovered from JGI’s IMG/M database and … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … An assay used for profiling transcription factor binding sites across entire … The JGI uniquely offers quantitative Stable Isotope Probing (SIP) …

… The mission of the Joint Genome Institute is to serve the scientific community as … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … as needed), and the work plan is written into a Statement of Work document. …

… The Facilities Integrating Collaborations for User Science (FICUS) … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …

… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological …

… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … used in the biotechnology industry to produce enzymes, proteins, and other chemicals. Summary Filamentous fungi are … fungi. The work also suggests a new approach to gene annotation, which then can be explored in depth for multiple …

… Tracking evolution of symbiotic lifestyles across multiple fungal … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …