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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA … clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful … features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements … to enable great science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th …
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On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires
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Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex
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A Community Resource for Secondary Metabolite Researchers
… shared by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions
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Virus-associated organosulfur metabolism in human and environmental systems
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Diterpene Synthase‐Catalyzed Biosynthesis of Distinct Clerodane Stereoisomers
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Metabolomics Technology Group
Our lab is using mass spectrometry based metabolite profiling to … provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is … the distributed and dynamic metabolite networks of environmental microbes and how they transform their …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before … and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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