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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Next generation sequencing data of a defined microbial mock community
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Identifying genomic data use with the Data Citation Explorer
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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Natural Prodcast Episode 6: Marc Chevrette
Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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Natural Prodcast Episode 11: Marnix Medema
… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … the development of the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award …
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