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… of Bordeaux Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the …

… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …

… to include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental … community is of utmost importance. The scope of handling 18 different species is beyond the capacity of a single lab. …

Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 … archaeal− bacterial consortia. PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps …

… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen …

… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … real-time, video-conferenced seminars with the class. The 18 students organized and conducted a field trip, armed with … to write a final paper that  could be published. Watching 18 students working to create a paper simultaneously in the …

… cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of …

… the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …

… collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …

Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI …

Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of …

… hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a …