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Webinar: PhycoCosm Tutorial
… data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI … now – large scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, pretty high …
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JGI Portals
… metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department … 101001675-ORIGINS) and from the FRM/FSER (FRM/FSER202302017064) to P.-M.D., from the CNRS to P.-M.D. and H.P. … LEVEL-UP ANR-21-CE20-0010-01) to C.J., from ZhuJiang (2019ZT08N628) and the National Natural Science Foundation of China …
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You Can Move, But You Can’t Hide
… the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific … resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. Department …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… which archives and makes available for research over 100,000 samples and specimens of over 60 different types of … learn more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in … genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., Lovell, …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in … Tips for Submitting Successful Proposals December 9  4:15pm PT (online) Town Hall on how the Facilities Integrating … core collection strategy and data types available” December 17  6:40am Convention Center Rm 267-268: Laura Meredith, …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … those. That work published in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and … of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … what is still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much …
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