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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … now. But was there any reward to the people that originally discovered how coffee could be used?  The same can …
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Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering
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Partnerships: Adopt-A-Genome
… 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … for enabling large-scale comparative analysis, as well as mining and visualization of big data. … BA in Biology, … et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. …
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UC Merced Interns Reflect on Their JGI Summer Projects
Learn more about their work here in a series of videos produced by JGI Communications & Outreach intern … JGI also hosted events to enable students to showcase their work and even a celebratory toast at the end of … to the research of JGI scientists. Check out the short videos highlighting the exciting work done by the 2020 …
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Protein structure determination using metagenome sequence data
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Natural Prodcast Episode 5: Brad Moore
Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes and genomes. We’re really hoping to – we’re …
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Accelerating Metagenomics Discoveries with Deep Learning
… to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to … (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence … He also aims to detect structural similarities in proteins that low sequence identity may belie. The …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from … field as it relates to structure elucidation and genome mining, and how we might start to better connect those two … natural products in the first place? ROGER:  So I was originally trained in the UK, I did my undergraduate degree at …
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Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … DNA design and synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked … the organism. The team demonstrated that this tool, called CRISPR inhibition or CRISPRi, works (see the article …
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