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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and …
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A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and …
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Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … falls within that single beam. When it comes to microbial communities, scientists have historically been unable to see … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach …
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