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Beyond the census of human gut dwellers
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with … effort. So I had a PhD student named Brian Wolff. He was looking at the invertebrate communities upstream and …
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Data Policy
Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user … and may also be added during the proposal lifecycle based on scientific need. Proposals are considered complete …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all …
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … of their kind, deployed to tens of pharmaceutical and biotech companies. … Chen I-MA, Chu K, Palaniappan K, Ratner A, …
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Genomics of cellulosic biofuels
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Marine Microbe Contains Multitudes
In the ocean’s North Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists … teaching materials and bioinformatics exercises … Beyond providing a scalable solution for production of …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find …
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Plant-Microbial Interactions Group
… including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … plant-bacterial-phage model system. We seek to expand beyond this model system by identifying phages and …
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was …
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Thermoacidophilic proteins for biofuel production
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