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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid … technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. …
Learn more
JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable …
Learn more
JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … P. virgatum on Phytozome … Plant Dataset …
Learn more
Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … Episode Transcript …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … Sorghum bicolor on Phytozome … Learn more on the EPICON project … Plant Datasets …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global … however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and … measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … and metatranscriptomic sequencing was performed at the JGI under a Community Science Program and the University of …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All proposals undergo technical review by JGI staff as well as staff at the other participating …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … 1KFG project on MycoCosm … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … to uncover the complex interactions and functions that shape ecosystems. By decoding the microbial DNA in …
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